prokka_result - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaCAGMFGLM_4 (original name was: gnl|Prokka|CAGMFGLM_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	T3PKS	346,145	371,719

gnlProkkaCAGMFGLM_11 (original name was: gnl|Prokka|CAGMFGLM_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	cyclic-lactone-autoinducer	9,755	30,460

gnlProkkaCAGMFGLM_31 (original name was: gnl|Prokka|CAGMFGLM_31)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	terpene	394,358	415,239

gnlProkkaCAGMFGLM_32 (original name was: gnl|Prokka|CAGMFGLM_32)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	RiPP-like	106,753	118,903

Region	Type	From	To	Similarity
Region 4.1	T3PKS	346,145	371,719
Region 10.1	cyclic-lactone-autoinducer	9,755	30,460
Region 25.1	terpene	394,358	415,239
Region 26.1	RiPP-like	106,753	118,903

No secondary metabolite regions were found in these records:: gnlProkkaCAGMFGLM_1 (original name was: gnl|Prokka|CAGMFGLM_1); gnlProkkaCAGMFGLM_2 (original name was: gnl|Prokka|CAGMFGLM_2); gnlProkkaCAGMFGLM_3 (original name was: gnl|Prokka|CAGMFGLM_3); gnlProkkaCAGMFGLM_5 (original name was: gnl|Prokka|CAGMFGLM_5); gnlProkkaCAGMFGLM_7 (original name was: gnl|Prokka|CAGMFGLM_7); gnlProkkaCAGMFGLM_8 (original name was: gnl|Prokka|CAGMFGLM_8); gnlProkkaCAGMFGLM_9 (original name was: gnl|Prokka|CAGMFGLM_9); gnlProkkaCAGMFGLM_10 (original name was: gnl|Prokka|CAGMFGLM_10); gnlProkkaCAGMFGLM_12 (original name was: gnl|Prokka|CAGMFGLM_12); gnlProkkaCAGMFGLM_13 (original name was: gnl|Prokka|CAGMFGLM_13); gnlProkkaCAGMFGLM_14 (original name was: gnl|Prokka|CAGMFGLM_14); gnlProkkaCAGMFGLM_15 (original name was: gnl|Prokka|CAGMFGLM_15); gnlProkkaCAGMFGLM_18 (original name was: gnl|Prokka|CAGMFGLM_18); gnlProkkaCAGMFGLM_19 (original name was: gnl|Prokka|CAGMFGLM_19); gnlProkkaCAGMFGLM_20 (original name was: gnl|Prokka|CAGMFGLM_20); gnlProkkaCAGMFGLM_22 (original name was: gnl|Prokka|CAGMFGLM_22); gnlProkkaCAGMFGLM_23 (original name was: gnl|Prokka|CAGMFGLM_23); gnlProkkaCAGMFGLM_25 (original name was: gnl|Prokka|CAGMFGLM_25); gnlProkkaCAGMFGLM_26 (original name was: gnl|Prokka|CAGMFGLM_26); gnlProkkaCAGMFGLM_27 (original name was: gnl|Prokka|CAGMFGLM_27); gnlProkkaCAGMFGLM_28 (original name was: gnl|Prokka|CAGMFGLM_28); gnlProkkaCAGMFGLM_29 (original name was: gnl|Prokka|CAGMFGLM_29); gnlProkkaCAGMFGLM_33 (original name was: gnl|Prokka|CAGMFGLM_33); gnlProkkaCAGMFGLM_34 (original name was: gnl|Prokka|CAGMFGLM_34); gnlProkkaCAGMFGLM_35 (original name was: gnl|Prokka|CAGMFGLM_35); gnlProkkaCAGMFGLM_37 (original name was: gnl|Prokka|CAGMFGLM_37); gnlProkkaCAGMFGLM_38 (original name was: gnl|Prokka|CAGMFGLM_38); gnlProkkaCAGMFGLM_39 (original name was: gnl|Prokka|CAGMFGLM_39); gnlProkkaCAGMFGLM_41 (original name was: gnl|Prokka|CAGMFGLM_41); gnlProkkaCAGMFGLM_42 (original name was: gnl|Prokka|CAGMFGLM_42); gnlProkkaCAGMFGLM_43 (original name was: gnl|Prokka|CAGMFGLM_43); gnlProkkaCAGMFGLM_44 (original name was: gnl|Prokka|CAGMFGLM_44); gnlProkkaCAGMFGLM_45 (original name was: gnl|Prokka|CAGMFGLM_45)

Compact view

gnlProkkaCAGMFGLM_4 - Region 1 - T3PKS

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Location: 346,145 - 371,719 nt. (total: 25,575 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaCAGMFGLM_11 - Region 1 - cyclic-lactone-autoinducer

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Location: 9,755 - 30,460 nt. (total: 20,706 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaCAGMFGLM_31 - Region 1 - terpene

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Location: 394,358 - 415,239 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaCAGMFGLM_32 - Region 1 - RiPP-like

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Location: 106,753 - 118,903 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.