prokka_result - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaKMGJOBAE_3 (original name was: gnl|Prokka|KMGJOBAE_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	RiPP-like	1	11,662	coagulin	RiPP	80%

gnlProkkaKMGJOBAE_6 (original name was: gnl|Prokka|KMGJOBAE_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	RiPP-like	6,595	16,870	plantaricyclin	RiPP	71%

gnlProkkaKMGJOBAE_13 (original name was: gnl|Prokka|KMGJOBAE_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	T3PKS	345,995	371,696

gnlProkkaKMGJOBAE_19 (original name was: gnl|Prokka|KMGJOBAE_19)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	RiPP-like	17,543	29,693

gnlProkkaKMGJOBAE_47 (original name was: gnl|Prokka|KMGJOBAE_47)

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	terpene	399,512	420,393

gnlProkkaKMGJOBAE_55 (original name was: gnl|Prokka|KMGJOBAE_55)

Region	Type	From	To	Most similar known cluster		Similarity
Region 50.1	cyclic-lactone-autoinducer	206,435	219,786

No secondary metabolite regions were found in these records:: gnlProkkaKMGJOBAE_1 (original name was: gnl|Prokka|KMGJOBAE_1); gnlProkkaKMGJOBAE_2 (original name was: gnl|Prokka|KMGJOBAE_2); gnlProkkaKMGJOBAE_4 (original name was: gnl|Prokka|KMGJOBAE_4); gnlProkkaKMGJOBAE_5 (original name was: gnl|Prokka|KMGJOBAE_5); gnlProkkaKMGJOBAE_7 (original name was: gnl|Prokka|KMGJOBAE_7); gnlProkkaKMGJOBAE_8 (original name was: gnl|Prokka|KMGJOBAE_8); gnlProkkaKMGJOBAE_9 (original name was: gnl|Prokka|KMGJOBAE_9); gnlProkkaKMGJOBAE_10 (original name was: gnl|Prokka|KMGJOBAE_10); gnlProkkaKMGJOBAE_11 (original name was: gnl|Prokka|KMGJOBAE_11); gnlProkkaKMGJOBAE_12 (original name was: gnl|Prokka|KMGJOBAE_12); gnlProkkaKMGJOBAE_14 (original name was: gnl|Prokka|KMGJOBAE_14); gnlProkkaKMGJOBAE_17 (original name was: gnl|Prokka|KMGJOBAE_17); gnlProkkaKMGJOBAE_18 (original name was: gnl|Prokka|KMGJOBAE_18); gnlProkkaKMGJOBAE_20 (original name was: gnl|Prokka|KMGJOBAE_20); gnlProkkaKMGJOBAE_21 (original name was: gnl|Prokka|KMGJOBAE_21); gnlProkkaKMGJOBAE_22 (original name was: gnl|Prokka|KMGJOBAE_22); gnlProkkaKMGJOBAE_23 (original name was: gnl|Prokka|KMGJOBAE_23); gnlProkkaKMGJOBAE_24 (original name was: gnl|Prokka|KMGJOBAE_24); gnlProkkaKMGJOBAE_25 (original name was: gnl|Prokka|KMGJOBAE_25); gnlProkkaKMGJOBAE_27 (original name was: gnl|Prokka|KMGJOBAE_27); gnlProkkaKMGJOBAE_28 (original name was: gnl|Prokka|KMGJOBAE_28); gnlProkkaKMGJOBAE_29 (original name was: gnl|Prokka|KMGJOBAE_29); gnlProkkaKMGJOBAE_30 (original name was: gnl|Prokka|KMGJOBAE_30); gnlProkkaKMGJOBAE_31 (original name was: gnl|Prokka|KMGJOBAE_31); gnlProkkaKMGJOBAE_32 (original name was: gnl|Prokka|KMGJOBAE_32); gnlProkkaKMGJOBAE_33 (original name was: gnl|Prokka|KMGJOBAE_33); gnlProkkaKMGJOBAE_34 (original name was: gnl|Prokka|KMGJOBAE_34); gnlProkkaKMGJOBAE_35 (original name was: gnl|Prokka|KMGJOBAE_35); gnlProkkaKMGJOBAE_36 (original name was: gnl|Prokka|KMGJOBAE_36); gnlProkkaKMGJOBAE_37 (original name was: gnl|Prokka|KMGJOBAE_37); gnlProkkaKMGJOBAE_39 (original name was: gnl|Prokka|KMGJOBAE_39); gnlProkkaKMGJOBAE_40 (original name was: gnl|Prokka|KMGJOBAE_40); gnlProkkaKMGJOBAE_41 (original name was: gnl|Prokka|KMGJOBAE_41); gnlProkkaKMGJOBAE_42 (original name was: gnl|Prokka|KMGJOBAE_42); gnlProkkaKMGJOBAE_43 (original name was: gnl|Prokka|KMGJOBAE_43); gnlProkkaKMGJOBAE_44 (original name was: gnl|Prokka|KMGJOBAE_44); gnlProkkaKMGJOBAE_45 (original name was: gnl|Prokka|KMGJOBAE_45); gnlProkkaKMGJOBAE_46 (original name was: gnl|Prokka|KMGJOBAE_46); gnlProkkaKMGJOBAE_48 (original name was: gnl|Prokka|KMGJOBAE_48); gnlProkkaKMGJOBAE_49 (original name was: gnl|Prokka|KMGJOBAE_49); gnlProkkaKMGJOBAE_51 (original name was: gnl|Prokka|KMGJOBAE_51); gnlProkkaKMGJOBAE_52 (original name was: gnl|Prokka|KMGJOBAE_52); gnlProkkaKMGJOBAE_53 (original name was: gnl|Prokka|KMGJOBAE_53); gnlProkkaKMGJOBAE_54 (original name was: gnl|Prokka|KMGJOBAE_54); gnlProkkaKMGJOBAE_56 (original name was: gnl|Prokka|KMGJOBAE_56)

Compact view

gnlProkkaKMGJOBAE_3 - Region 1 - RiPP-like

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Location: 1 - 11,662 nt. (total: 11,662 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaKMGJOBAE_6 - Region 1 - RiPP-like

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Location: 6,595 - 16,870 nt. (total: 10,276 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaKMGJOBAE_13 - Region 1 - T3PKS

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Location: 345,995 - 371,696 nt. (total: 25,702 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaKMGJOBAE_19 - Region 1 - RiPP-like

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Location: 17,543 - 29,693 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaKMGJOBAE_47 - Region 1 - terpene

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Location: 399,512 - 420,393 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaKMGJOBAE_55 - Region 1 - cyclic-lactone-autoinducer

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Location: 206,435 - 219,786 nt. (total: 13,352 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.