prokka_result - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGFPDDBAO_6 (original name was: gnl|Prokka|GFPDDBAO_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	RiPP-like	107,320	119,470

gnlProkkaGFPDDBAO_14 (original name was: gnl|Prokka|GFPDDBAO_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	terpene	96,887	117,768

gnlProkkaGFPDDBAO_16 (original name was: gnl|Prokka|GFPDDBAO_16)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	cyclic-lactone-autoinducer	8,692	29,403

gnlProkkaGFPDDBAO_21 (original name was: gnl|Prokka|GFPDDBAO_21)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	T3PKS	1	25,587

Region	Type	From	To	Similarity
Region 6.1	RiPP-like	107,320	119,470
Region 11.1	terpene	96,887	117,768
Region 13.1	cyclic-lactone-autoinducer	8,692	29,403
Region 18.1	T3PKS	1	25,587

No secondary metabolite regions were found in these records:: gnlProkkaGFPDDBAO_1 (original name was: gnl|Prokka|GFPDDBAO_1); gnlProkkaGFPDDBAO_2 (original name was: gnl|Prokka|GFPDDBAO_2); gnlProkkaGFPDDBAO_3 (original name was: gnl|Prokka|GFPDDBAO_3); gnlProkkaGFPDDBAO_4 (original name was: gnl|Prokka|GFPDDBAO_4); gnlProkkaGFPDDBAO_5 (original name was: gnl|Prokka|GFPDDBAO_5); gnlProkkaGFPDDBAO_8 (original name was: gnl|Prokka|GFPDDBAO_8); gnlProkkaGFPDDBAO_10 (original name was: gnl|Prokka|GFPDDBAO_10); gnlProkkaGFPDDBAO_11 (original name was: gnl|Prokka|GFPDDBAO_11); gnlProkkaGFPDDBAO_13 (original name was: gnl|Prokka|GFPDDBAO_13); gnlProkkaGFPDDBAO_15 (original name was: gnl|Prokka|GFPDDBAO_15); gnlProkkaGFPDDBAO_17 (original name was: gnl|Prokka|GFPDDBAO_17); gnlProkkaGFPDDBAO_18 (original name was: gnl|Prokka|GFPDDBAO_18); gnlProkkaGFPDDBAO_19 (original name was: gnl|Prokka|GFPDDBAO_19); gnlProkkaGFPDDBAO_20 (original name was: gnl|Prokka|GFPDDBAO_20); gnlProkkaGFPDDBAO_22 (original name was: gnl|Prokka|GFPDDBAO_22); gnlProkkaGFPDDBAO_23 (original name was: gnl|Prokka|GFPDDBAO_23); gnlProkkaGFPDDBAO_24 (original name was: gnl|Prokka|GFPDDBAO_24); gnlProkkaGFPDDBAO_25 (original name was: gnl|Prokka|GFPDDBAO_25); gnlProkkaGFPDDBAO_26 (original name was: gnl|Prokka|GFPDDBAO_26)

Compact view

gnlProkkaGFPDDBAO_6 - Region 1 - RiPP-like

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Location: 107,320 - 119,470 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGFPDDBAO_14 - Region 1 - terpene

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Location: 96,887 - 117,768 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGFPDDBAO_16 - Region 1 - cyclic-lactone-autoinducer

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Location: 8,692 - 29,403 nt. (total: 20,712 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGFPDDBAO_21 - Region 1 - T3PKS

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Location: 1 - 25,587 nt. (total: 25,587 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.