prokka_result - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPJKDNOGH_13 (original name was: gnl|Prokka|PJKDNOGH_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	T3PKS	149,072	190,241

gnlProkkaPJKDNOGH_19 (original name was: gnl|Prokka|PJKDNOGH_19)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	terpene	27,382	48,263

gnlProkkaPJKDNOGH_28 (original name was: gnl|Prokka|PJKDNOGH_28)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	cyclic-lactone-autoinducer	202,324	223,029

gnlProkkaPJKDNOGH_30 (original name was: gnl|Prokka|PJKDNOGH_30)

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	RiPP-like	181,078	193,228

Region	Type	From	To	Similarity
Region 10.1	T3PKS	149,072	190,241
Region 14.1	terpene	27,382	48,263
Region 22.1	cyclic-lactone-autoinducer	202,324	223,029
Region 24.1	RiPP-like	181,078	193,228

No secondary metabolite regions were found in these records:: gnlProkkaPJKDNOGH_1 (original name was: gnl|Prokka|PJKDNOGH_1); gnlProkkaPJKDNOGH_2 (original name was: gnl|Prokka|PJKDNOGH_2); gnlProkkaPJKDNOGH_4 (original name was: gnl|Prokka|PJKDNOGH_4); gnlProkkaPJKDNOGH_5 (original name was: gnl|Prokka|PJKDNOGH_5); gnlProkkaPJKDNOGH_6 (original name was: gnl|Prokka|PJKDNOGH_6); gnlProkkaPJKDNOGH_7 (original name was: gnl|Prokka|PJKDNOGH_7); gnlProkkaPJKDNOGH_9 (original name was: gnl|Prokka|PJKDNOGH_9); gnlProkkaPJKDNOGH_11 (original name was: gnl|Prokka|PJKDNOGH_11); gnlProkkaPJKDNOGH_12 (original name was: gnl|Prokka|PJKDNOGH_12); gnlProkkaPJKDNOGH_14 (original name was: gnl|Prokka|PJKDNOGH_14); gnlProkkaPJKDNOGH_15 (original name was: gnl|Prokka|PJKDNOGH_15); gnlProkkaPJKDNOGH_17 (original name was: gnl|Prokka|PJKDNOGH_17); gnlProkkaPJKDNOGH_21 (original name was: gnl|Prokka|PJKDNOGH_21); gnlProkkaPJKDNOGH_22 (original name was: gnl|Prokka|PJKDNOGH_22); gnlProkkaPJKDNOGH_23 (original name was: gnl|Prokka|PJKDNOGH_23); gnlProkkaPJKDNOGH_24 (original name was: gnl|Prokka|PJKDNOGH_24); gnlProkkaPJKDNOGH_25 (original name was: gnl|Prokka|PJKDNOGH_25); gnlProkkaPJKDNOGH_26 (original name was: gnl|Prokka|PJKDNOGH_26); gnlProkkaPJKDNOGH_27 (original name was: gnl|Prokka|PJKDNOGH_27); gnlProkkaPJKDNOGH_29 (original name was: gnl|Prokka|PJKDNOGH_29)

Compact view

gnlProkkaPJKDNOGH_13 - Region 1 - T3PKS

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Location: 149,072 - 190,241 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPJKDNOGH_19 - Region 1 - terpene

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Location: 27,382 - 48,263 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPJKDNOGH_28 - Region 1 - cyclic-lactone-autoinducer

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Location: 202,324 - 223,029 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPJKDNOGH_30 - Region 1 - RiPP-like

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Location: 181,078 - 193,228 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.