prokka_result - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaFLJAGAPE_9 (original name was: gnl|Prokka|FLJAGAPE_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	T3PKS	85,394	110,968

gnlProkkaFLJAGAPE_29 (original name was: gnl|Prokka|FLJAGAPE_29)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	cyclic-lactone-autoinducer	156,200	176,905
Region 26.2	RiPP-like	573,220	585,370

gnlProkkaFLJAGAPE_35 (original name was: gnl|Prokka|FLJAGAPE_35)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	terpene	85,703	106,584

Region	Type	From	To	Similarity
Region 8.1	T3PKS	85,394	110,968
Region 26.1	cyclic-lactone-autoinducer	156,200	176,905
Region 26.2	RiPP-like	573,220	585,370
Region 30.1	terpene	85,703	106,584

No secondary metabolite regions were found in these records:: gnlProkkaFLJAGAPE_1 (original name was: gnl|Prokka|FLJAGAPE_1); gnlProkkaFLJAGAPE_2 (original name was: gnl|Prokka|FLJAGAPE_2); gnlProkkaFLJAGAPE_4 (original name was: gnl|Prokka|FLJAGAPE_4); gnlProkkaFLJAGAPE_5 (original name was: gnl|Prokka|FLJAGAPE_5); gnlProkkaFLJAGAPE_6 (original name was: gnl|Prokka|FLJAGAPE_6); gnlProkkaFLJAGAPE_7 (original name was: gnl|Prokka|FLJAGAPE_7); gnlProkkaFLJAGAPE_8 (original name was: gnl|Prokka|FLJAGAPE_8); gnlProkkaFLJAGAPE_10 (original name was: gnl|Prokka|FLJAGAPE_10); gnlProkkaFLJAGAPE_11 (original name was: gnl|Prokka|FLJAGAPE_11); gnlProkkaFLJAGAPE_12 (original name was: gnl|Prokka|FLJAGAPE_12); gnlProkkaFLJAGAPE_13 (original name was: gnl|Prokka|FLJAGAPE_13); gnlProkkaFLJAGAPE_14 (original name was: gnl|Prokka|FLJAGAPE_14); gnlProkkaFLJAGAPE_15 (original name was: gnl|Prokka|FLJAGAPE_15); gnlProkkaFLJAGAPE_16 (original name was: gnl|Prokka|FLJAGAPE_16); gnlProkkaFLJAGAPE_17 (original name was: gnl|Prokka|FLJAGAPE_17); gnlProkkaFLJAGAPE_18 (original name was: gnl|Prokka|FLJAGAPE_18); gnlProkkaFLJAGAPE_19 (original name was: gnl|Prokka|FLJAGAPE_19); gnlProkkaFLJAGAPE_21 (original name was: gnl|Prokka|FLJAGAPE_21); gnlProkkaFLJAGAPE_23 (original name was: gnl|Prokka|FLJAGAPE_23); gnlProkkaFLJAGAPE_24 (original name was: gnl|Prokka|FLJAGAPE_24); gnlProkkaFLJAGAPE_25 (original name was: gnl|Prokka|FLJAGAPE_25); gnlProkkaFLJAGAPE_26 (original name was: gnl|Prokka|FLJAGAPE_26); gnlProkkaFLJAGAPE_27 (original name was: gnl|Prokka|FLJAGAPE_27); gnlProkkaFLJAGAPE_28 (original name was: gnl|Prokka|FLJAGAPE_28); gnlProkkaFLJAGAPE_30 (original name was: gnl|Prokka|FLJAGAPE_30); gnlProkkaFLJAGAPE_31 (original name was: gnl|Prokka|FLJAGAPE_31); gnlProkkaFLJAGAPE_34 (original name was: gnl|Prokka|FLJAGAPE_34); gnlProkkaFLJAGAPE_36 (original name was: gnl|Prokka|FLJAGAPE_36); gnlProkkaFLJAGAPE_37 (original name was: gnl|Prokka|FLJAGAPE_37); gnlProkkaFLJAGAPE_38 (original name was: gnl|Prokka|FLJAGAPE_38); gnlProkkaFLJAGAPE_39 (original name was: gnl|Prokka|FLJAGAPE_39); gnlProkkaFLJAGAPE_40 (original name was: gnl|Prokka|FLJAGAPE_40)

Compact view

gnlProkkaFLJAGAPE_9 - Region 1 - T3PKS

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Location: 85,394 - 110,968 nt. (total: 25,575 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFLJAGAPE_29 - Region 1 - cyclic-lactone-autoinducer

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Location: 156,200 - 176,905 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFLJAGAPE_29 - Region 2 - RiPP-like

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Location: 573,220 - 585,370 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFLJAGAPE_35 - Region 1 - terpene

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Location: 85,703 - 106,584 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.