prokka_result - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHNOPFBJE_13 (original name was: gnl|Prokka|HNOPFBJE_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	T3PKS	83,637	124,806

gnlProkkaHNOPFBJE_19 (original name was: gnl|Prokka|HNOPFBJE_19)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	cyclic-lactone-autoinducer	2,675	23,380

gnlProkkaHNOPFBJE_24 (original name was: gnl|Prokka|HNOPFBJE_24)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	RiPP-like	87,109	99,259

gnlProkkaHNOPFBJE_44 (original name was: gnl|Prokka|HNOPFBJE_44)

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	terpene	76,055	96,936

Region	Type	From	To	Similarity
Region 9.1	T3PKS	83,637	124,806
Region 14.1	cyclic-lactone-autoinducer	2,675	23,380
Region 19.1	RiPP-like	87,109	99,259
Region 38.1	terpene	76,055	96,936

No secondary metabolite regions were found in these records:: gnlProkkaHNOPFBJE_1 (original name was: gnl|Prokka|HNOPFBJE_1); gnlProkkaHNOPFBJE_2 (original name was: gnl|Prokka|HNOPFBJE_2); gnlProkkaHNOPFBJE_4 (original name was: gnl|Prokka|HNOPFBJE_4); gnlProkkaHNOPFBJE_5 (original name was: gnl|Prokka|HNOPFBJE_5); gnlProkkaHNOPFBJE_7 (original name was: gnl|Prokka|HNOPFBJE_7); gnlProkkaHNOPFBJE_8 (original name was: gnl|Prokka|HNOPFBJE_8); gnlProkkaHNOPFBJE_9 (original name was: gnl|Prokka|HNOPFBJE_9); gnlProkkaHNOPFBJE_11 (original name was: gnl|Prokka|HNOPFBJE_11); gnlProkkaHNOPFBJE_14 (original name was: gnl|Prokka|HNOPFBJE_14); gnlProkkaHNOPFBJE_15 (original name was: gnl|Prokka|HNOPFBJE_15); gnlProkkaHNOPFBJE_16 (original name was: gnl|Prokka|HNOPFBJE_16); gnlProkkaHNOPFBJE_18 (original name was: gnl|Prokka|HNOPFBJE_18); gnlProkkaHNOPFBJE_20 (original name was: gnl|Prokka|HNOPFBJE_20); gnlProkkaHNOPFBJE_21 (original name was: gnl|Prokka|HNOPFBJE_21); gnlProkkaHNOPFBJE_22 (original name was: gnl|Prokka|HNOPFBJE_22); gnlProkkaHNOPFBJE_23 (original name was: gnl|Prokka|HNOPFBJE_23); gnlProkkaHNOPFBJE_25 (original name was: gnl|Prokka|HNOPFBJE_25); gnlProkkaHNOPFBJE_27 (original name was: gnl|Prokka|HNOPFBJE_27); gnlProkkaHNOPFBJE_28 (original name was: gnl|Prokka|HNOPFBJE_28); gnlProkkaHNOPFBJE_29 (original name was: gnl|Prokka|HNOPFBJE_29); gnlProkkaHNOPFBJE_30 (original name was: gnl|Prokka|HNOPFBJE_30); gnlProkkaHNOPFBJE_31 (original name was: gnl|Prokka|HNOPFBJE_31); gnlProkkaHNOPFBJE_32 (original name was: gnl|Prokka|HNOPFBJE_32); gnlProkkaHNOPFBJE_33 (original name was: gnl|Prokka|HNOPFBJE_33); gnlProkkaHNOPFBJE_34 (original name was: gnl|Prokka|HNOPFBJE_34); gnlProkkaHNOPFBJE_35 (original name was: gnl|Prokka|HNOPFBJE_35); gnlProkkaHNOPFBJE_36 (original name was: gnl|Prokka|HNOPFBJE_36); gnlProkkaHNOPFBJE_37 (original name was: gnl|Prokka|HNOPFBJE_37); gnlProkkaHNOPFBJE_38 (original name was: gnl|Prokka|HNOPFBJE_38); gnlProkkaHNOPFBJE_39 (original name was: gnl|Prokka|HNOPFBJE_39); gnlProkkaHNOPFBJE_40 (original name was: gnl|Prokka|HNOPFBJE_40); gnlProkkaHNOPFBJE_41 (original name was: gnl|Prokka|HNOPFBJE_41); gnlProkkaHNOPFBJE_42 (original name was: gnl|Prokka|HNOPFBJE_42); gnlProkkaHNOPFBJE_43 (original name was: gnl|Prokka|HNOPFBJE_43)

Compact view

gnlProkkaHNOPFBJE_13 - Region 1 - T3PKS

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Location: 83,637 - 124,806 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHNOPFBJE_19 - Region 1 - cyclic-lactone-autoinducer

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Location: 2,675 - 23,380 nt. (total: 20,706 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHNOPFBJE_24 - Region 1 - RiPP-like

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Location: 87,109 - 99,259 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHNOPFBJE_44 - Region 1 - terpene

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Location: 76,055 - 96,936 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.