prokka_result - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaCFGDLDNA_8 (original name was: gnl|Prokka|CFGDLDNA_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	T3PKS	85,394	110,968

gnlProkkaCFGDLDNA_11 (original name was: gnl|Prokka|CFGDLDNA_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	cyclic-lactone-autoinducer	156,202	176,907
Region 10.2	RiPP-like	573,222	585,372

gnlProkkaCFGDLDNA_33 (original name was: gnl|Prokka|CFGDLDNA_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	terpene	85,703	106,584

Region	Type	From	To	Similarity
Region 7.1	T3PKS	85,394	110,968
Region 10.1	cyclic-lactone-autoinducer	156,202	176,907
Region 10.2	RiPP-like	573,222	585,372
Region 28.1	terpene	85,703	106,584

No secondary metabolite regions were found in these records:: gnlProkkaCFGDLDNA_1 (original name was: gnl|Prokka|CFGDLDNA_1); gnlProkkaCFGDLDNA_2 (original name was: gnl|Prokka|CFGDLDNA_2); gnlProkkaCFGDLDNA_4 (original name was: gnl|Prokka|CFGDLDNA_4); gnlProkkaCFGDLDNA_5 (original name was: gnl|Prokka|CFGDLDNA_5); gnlProkkaCFGDLDNA_6 (original name was: gnl|Prokka|CFGDLDNA_6); gnlProkkaCFGDLDNA_7 (original name was: gnl|Prokka|CFGDLDNA_7); gnlProkkaCFGDLDNA_9 (original name was: gnl|Prokka|CFGDLDNA_9); gnlProkkaCFGDLDNA_10 (original name was: gnl|Prokka|CFGDLDNA_10); gnlProkkaCFGDLDNA_12 (original name was: gnl|Prokka|CFGDLDNA_12); gnlProkkaCFGDLDNA_13 (original name was: gnl|Prokka|CFGDLDNA_13); gnlProkkaCFGDLDNA_14 (original name was: gnl|Prokka|CFGDLDNA_14); gnlProkkaCFGDLDNA_15 (original name was: gnl|Prokka|CFGDLDNA_15); gnlProkkaCFGDLDNA_16 (original name was: gnl|Prokka|CFGDLDNA_16); gnlProkkaCFGDLDNA_17 (original name was: gnl|Prokka|CFGDLDNA_17); gnlProkkaCFGDLDNA_18 (original name was: gnl|Prokka|CFGDLDNA_18); gnlProkkaCFGDLDNA_21 (original name was: gnl|Prokka|CFGDLDNA_21); gnlProkkaCFGDLDNA_22 (original name was: gnl|Prokka|CFGDLDNA_22); gnlProkkaCFGDLDNA_23 (original name was: gnl|Prokka|CFGDLDNA_23); gnlProkkaCFGDLDNA_24 (original name was: gnl|Prokka|CFGDLDNA_24); gnlProkkaCFGDLDNA_25 (original name was: gnl|Prokka|CFGDLDNA_25); gnlProkkaCFGDLDNA_26 (original name was: gnl|Prokka|CFGDLDNA_26); gnlProkkaCFGDLDNA_27 (original name was: gnl|Prokka|CFGDLDNA_27); gnlProkkaCFGDLDNA_28 (original name was: gnl|Prokka|CFGDLDNA_28); gnlProkkaCFGDLDNA_31 (original name was: gnl|Prokka|CFGDLDNA_31); gnlProkkaCFGDLDNA_32 (original name was: gnl|Prokka|CFGDLDNA_32); gnlProkkaCFGDLDNA_34 (original name was: gnl|Prokka|CFGDLDNA_34); gnlProkkaCFGDLDNA_35 (original name was: gnl|Prokka|CFGDLDNA_35); gnlProkkaCFGDLDNA_36 (original name was: gnl|Prokka|CFGDLDNA_36)

Compact view

gnlProkkaCFGDLDNA_8 - Region 1 - T3PKS

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Location: 85,394 - 110,968 nt. (total: 25,575 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaCFGDLDNA_11 - Region 1 - cyclic-lactone-autoinducer

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Location: 156,202 - 176,907 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaCFGDLDNA_11 - Region 2 - RiPP-like

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Location: 573,222 - 585,372 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaCFGDLDNA_33 - Region 1 - terpene

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Location: 85,703 - 106,584 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.