prokka_result - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaKHLPKHMP_4 (original name was: gnl|Prokka|KHLPKHMP_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	RiPP-like	435,286	447,436

gnlProkkaKHLPKHMP_5 (original name was: gnl|Prokka|KHLPKHMP_5)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	terpene	71,231	92,112

gnlProkkaKHLPKHMP_7 (original name was: gnl|Prokka|KHLPKHMP_7)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	cyclic-lactone-autoinducer	10,463	31,168

gnlProkkaKHLPKHMP_16 (original name was: gnl|Prokka|KHLPKHMP_16)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	T3PKS	167,311	208,480

Region	Type	From	To	Similarity
Region 3.1	RiPP-like	435,286	447,436
Region 4.1	terpene	71,231	92,112
Region 6.1	cyclic-lactone-autoinducer	10,463	31,168
Region 14.1	T3PKS	167,311	208,480

No secondary metabolite regions were found in these records:: gnlProkkaKHLPKHMP_1 (original name was: gnl|Prokka|KHLPKHMP_1); gnlProkkaKHLPKHMP_3 (original name was: gnl|Prokka|KHLPKHMP_3); gnlProkkaKHLPKHMP_6 (original name was: gnl|Prokka|KHLPKHMP_6); gnlProkkaKHLPKHMP_8 (original name was: gnl|Prokka|KHLPKHMP_8); gnlProkkaKHLPKHMP_9 (original name was: gnl|Prokka|KHLPKHMP_9); gnlProkkaKHLPKHMP_10 (original name was: gnl|Prokka|KHLPKHMP_10); gnlProkkaKHLPKHMP_11 (original name was: gnl|Prokka|KHLPKHMP_11); gnlProkkaKHLPKHMP_12 (original name was: gnl|Prokka|KHLPKHMP_12); gnlProkkaKHLPKHMP_14 (original name was: gnl|Prokka|KHLPKHMP_14); gnlProkkaKHLPKHMP_15 (original name was: gnl|Prokka|KHLPKHMP_15); gnlProkkaKHLPKHMP_17 (original name was: gnl|Prokka|KHLPKHMP_17)

Compact view

gnlProkkaKHLPKHMP_4 - Region 1 - RiPP-like

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Location: 435,286 - 447,436 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaKHLPKHMP_5 - Region 1 - terpene

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Location: 71,231 - 92,112 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaKHLPKHMP_7 - Region 1 - cyclic-lactone-autoinducer

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Location: 10,463 - 31,168 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaKHLPKHMP_16 - Region 1 - T3PKS

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Location: 167,311 - 208,480 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.