Potential risk score of uploaded strain

ARGs VFs PGs PRS
0022.00

PRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
GLHOEBBG_193705737761WalR2.57e-114transcriptional regulatory protein84.25100.00EPH95667
GLHOEBBG_45195354195160CspR8.92e-30cold shock protein84.6198.48AAO82613
GLHOEBBG_45195354195157CspA1.37e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
GLHOEBBG_154556390rep28936 / 936100.00CP005948
GLHOEBBG_2822072921rep38715 / 90396.78CP005943
GLHOEBBG_271998821088repUS731101 / 110195.46CP002654
GLHOEBBG_33591315repUS64958 / 95492.17JN601038

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
GLHOEBBG_11.00.01.0
GLHOEBBG_21.00.01.0
GLHOEBBG_31.00.01.0
GLHOEBBG_41.00.01.0
GLHOEBBG_51.00.01.0
GLHOEBBG_60.01.00.0
GLHOEBBG_81.00.01.0
GLHOEBBG_91.00.01.0
GLHOEBBG_101.00.01.0
GLHOEBBG_111.00.01.0
GLHOEBBG_121.00.01.0
GLHOEBBG_131.00.01.0
GLHOEBBG_141.00.01.0
GLHOEBBG_150.01.00.0
GLHOEBBG_160.01.00.0
GLHOEBBG_180.01.00.0
GLHOEBBG_190.01.00.0
GLHOEBBG_200.01.00.0
GLHOEBBG_210.01.00.0
GLHOEBBG_221.00.01.0
GLHOEBBG_241.00.01.0
GLHOEBBG_250.01.00.0
GLHOEBBG_261.00.01.0
GLHOEBBG_271.00.01.0
GLHOEBBG_281.00.01.0
GLHOEBBG_290.01.00.0
GLHOEBBG_310.01.00.0
GLHOEBBG_330.01.00.0
GLHOEBBG_340.01.00.0
GLHOEBBG_351.00.01.0
GLHOEBBG_361.00.01.0
GLHOEBBG_381.00.01.0
GLHOEBBG_390.01.00.0
GLHOEBBG_411.00.01.0
GLHOEBBG_421.00.01.0
GLHOEBBG_450.01.00.0
GLHOEBBG_461.00.01.0
GLHOEBBG_471.00.01.0
GLHOEBBG_481.00.01.0
GLHOEBBG_490.01.00.0
GLHOEBBG_511.00.01.0
GLHOEBBG_521.00.01.0
GLHOEBBG_541.00.01.0
GLHOEBBG_550.01.00.0
GLHOEBBG_560.01.00.0
GLHOEBBG_570.01.00.0
GLHOEBBG_580.01.00.0
GLHOEBBG_591.00.01.0
GLHOEBBG_600.01.00.0
GLHOEBBG_610.01.00.0
GLHOEBBG_621.00.01.0
GLHOEBBG_631.00.01.0
GLHOEBBG_641.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
GLHOEBBG_192490035814FalseSiphoviridaeVOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204
GLHOEBBG_212251153059FalseSiphoviridaeVOG4693, VOG0198, VOG0608, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637, VOG0054
GLHOEBBG_451843248266FalseSiphoviridaeVOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4568, VOG4556, VOG6939, VOG1886, VOG4581, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG0514, VOG10904, VOG0226, VOG0283, VOG0685

Phigaro v2.4.0 (Database: Jan. 2024 release)

Insertion sequence (IS) elements