Potential risk score of uploaded strain

ARGs VFs PGs PRS
0022.00

PRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
ICJHBCCI_414415943455WalR6.79e-115transcriptional regulatory protein84.25100.00EPH95667
ICJHBCCI_11156478156284CspR9.41e-30cold shock protein84.6198.48AAO82613
ICJHBCCI_11156478156281CspA1.44e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
ICJHBCCI_802005620957rep38902 / 90396.23CP005943
ICJHBCCI_3245005600repUS731101 / 110192.01CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
ICJHBCCI_11.00.01.0
ICJHBCCI_30.01.00.0
ICJHBCCI_40.01.00.0
ICJHBCCI_50.01.00.0
ICJHBCCI_60.01.00.0
ICJHBCCI_70.01.00.0
ICJHBCCI_81.00.01.0
ICJHBCCI_90.01.00.0
ICJHBCCI_100.01.00.0
ICJHBCCI_110.01.00.0
ICJHBCCI_121.00.01.0
ICJHBCCI_130.01.00.0
ICJHBCCI_140.01.00.0
ICJHBCCI_150.01.00.0
ICJHBCCI_160.01.00.0
ICJHBCCI_190.01.00.0
ICJHBCCI_200.01.00.0
ICJHBCCI_210.01.00.0
ICJHBCCI_220.01.00.0
ICJHBCCI_230.01.00.0
ICJHBCCI_241.00.01.0
ICJHBCCI_280.01.00.0
ICJHBCCI_301.00.01.0
ICJHBCCI_311.00.01.0
ICJHBCCI_321.00.01.0
ICJHBCCI_330.01.00.0
ICJHBCCI_340.01.00.0
ICJHBCCI_350.01.00.0
ICJHBCCI_360.01.00.0
ICJHBCCI_390.01.00.0
ICJHBCCI_400.01.00.0
ICJHBCCI_410.01.00.0
ICJHBCCI_420.01.00.0
ICJHBCCI_440.01.00.0
ICJHBCCI_451.00.01.0
ICJHBCCI_460.01.00.0
ICJHBCCI_480.01.00.0
ICJHBCCI_501.00.01.0
ICJHBCCI_510.01.00.0
ICJHBCCI_521.00.01.0
ICJHBCCI_531.00.01.0
ICJHBCCI_541.00.01.0
ICJHBCCI_551.00.01.0
ICJHBCCI_560.01.00.0
ICJHBCCI_571.00.01.0
ICJHBCCI_581.00.01.0
ICJHBCCI_590.01.00.0
ICJHBCCI_611.00.01.0
ICJHBCCI_620.01.00.0
ICJHBCCI_631.00.01.0
ICJHBCCI_641.00.01.0
ICJHBCCI_650.01.00.0
ICJHBCCI_661.00.01.0
ICJHBCCI_670.01.00.0
ICJHBCCI_680.01.00.0
ICJHBCCI_690.01.00.0
ICJHBCCI_700.01.00.0
ICJHBCCI_710.01.00.0
ICJHBCCI_720.01.00.0
ICJHBCCI_730.01.00.0
ICJHBCCI_740.01.00.0
ICJHBCCI_750.01.00.0
ICJHBCCI_771.00.01.0
ICJHBCCI_780.01.00.0
ICJHBCCI_791.00.01.0
ICJHBCCI_801.00.01.0
ICJHBCCI_810.01.00.0
ICJHBCCI_820.01.00.0
ICJHBCCI_840.01.00.0
ICJHBCCI_851.00.01.0
ICJHBCCI_861.00.01.0
ICJHBCCI_871.00.01.0
ICJHBCCI_880.01.00.0
ICJHBCCI_890.01.00.0
ICJHBCCI_901.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
ICJHBCCI_311066416921FalseSiphoviridaeVOG1886, VOG0202, VOG4556, VOG4568, VOG0205
ICJHBCCI_5664623026FalseSiphoviridaeVOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG0198, VOG0044, VOG0822, VOG6005, VOG0189, VOG8647, VOG0514, VOG0226
ICJHBCCI_626644189293FalseSiphoviridaeVOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6154
ICJHBCCI_629286699042FalseSiphoviridaeVOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548
ICJHBCCI_67526222064FalseSiphoviridaeVOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4553, VOG0204, VOG0198, VOG0275, VOG4122, VOG4821, VOG4602, VOG9667, VOG11077
ICJHBCCI_673230059493FalseSiphoviridaeVOG1183, VOG0796, VOG10227, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637

Phigaro v2.4.0 (Database: Jan. 2024 release)

Insertion sequence (IS) elements