| ARGs | VFs | PGs | PRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PJKDNOGH_26 | 93212 | 93916 | WalR | 1.41e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PJKDNOGH_15 | 186241 | 186047 | CspR | 1.19e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PJKDNOGH_15 | 186241 | 186044 | CspA | 1.83e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PJKDNOGH_27 | 14163 | 15260 | repUS73 | 1101 / 1101 | 93.73 | CP002654 |
| PJKDNOGH_1 | 8516 | 9450 | rep28 | 940 / 930 | 81.06 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJKDNOGH_1 | 1.0 | 0.0 | 1.0 |
| PJKDNOGH_2 | 1.0 | 0.0 | 1.0 |
| PJKDNOGH_4 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_5 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_7 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_9 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_11 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_13 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_14 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_15 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_17 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_19 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_21 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_22 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_23 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_24 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_25 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_26 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_27 | 1.0 | 0.0 | 1.0 |
| PJKDNOGH_28 | 0.0 | 1.0 | 0.0 |
| PJKDNOGH_29 | 1.0 | 0.0 | 1.0 |
| PJKDNOGH_30 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJKDNOGH_13 | 130560 | 156635 | False | Siphoviridae | VOG0044, VOG0044, VOG3643, VOG0198, VOG4841, VOG4581, VOG1886, VOG6939, VOG4556, VOG4568, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
| PJKDNOGH_14 | 142482 | 181656 | False | Siphoviridae | VOG6422, VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0686, VOG1844, VOG3015, VOG0198, VOG5047, VOG0586, VOG4693, VOG4566, VOG6495, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)