safety

Potential risk score of uploaded strain

ARGs	VFs	PGs	PRS
0	0	2	2.00

PRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes

Comprehensive Antibiotic Resistance Database (CARD)

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
OCHGMDOC_109	18660	17956	WalR	6.09e-115	transcriptional regulatory protein	84.25	100.00	EPH95667
OCHGMDOC_97	85900	85706	CspR	6.61e-30	cold shock protein	84.61	98.48	AAO82613
OCHGMDOC_97	85900	85703	CspA	9.02e-30	cold shock protein	84.85	100.00	CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid

PlasmidFinder

Query ID	Begin	End	Plasmid	Query / Template	Identity	Accession no.
OCHGMDOC_34	1831	2766	rep28	936 / 936	99.89	CP005948
OCHGMDOC_84	3131	4231	repUS73	1101 / 1101	97.18	CP002654
OCHGMDOC_4	1227	1857	rep38	632 / 903	91.77	CP005943
OCHGMDOC_3	599	1552	repUS64	956 / 954	89.96	JN601038

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID	Prediction	Chromosome	Plasmid
OCHGMDOC_1	1.0	0.0	1.0
OCHGMDOC_2	1.0	0.0	1.0
OCHGMDOC_3	1.0	0.0	1.0
OCHGMDOC_4	1.0	0.0	1.0
OCHGMDOC_5	1.0	0.0	1.0
OCHGMDOC_6	1.0	0.0	1.0
OCHGMDOC_7	0.0	1.0	0.0
OCHGMDOC_8	0.0	1.0	0.0
OCHGMDOC_9	0.0	1.0	0.0
OCHGMDOC_10	0.0	1.0	0.0
OCHGMDOC_11	0.0	1.0	0.0
OCHGMDOC_12	0.0	1.0	0.0
OCHGMDOC_14	1.0	0.0	1.0
OCHGMDOC_15	1.0	0.0	1.0
OCHGMDOC_16	1.0	0.0	1.0
OCHGMDOC_17	0.0	1.0	0.0
OCHGMDOC_18	0.0	1.0	0.0
OCHGMDOC_19	1.0	0.0	1.0
OCHGMDOC_20	0.0	1.0	0.0
OCHGMDOC_21	0.0	1.0	0.0
OCHGMDOC_22	1.0	0.0	1.0
OCHGMDOC_23	0.0	1.0	0.0
OCHGMDOC_24	1.0	0.0	1.0
OCHGMDOC_25	1.0	0.0	1.0
OCHGMDOC_26	1.0	0.0	1.0
OCHGMDOC_27	0.0	1.0	0.0
OCHGMDOC_29	0.0	1.0	0.0
OCHGMDOC_31	0.0	1.0	0.0
OCHGMDOC_32	1.0	0.0	1.0
OCHGMDOC_33	1.0	0.0	1.0
OCHGMDOC_34	1.0	0.0	1.0
OCHGMDOC_35	1.0	0.0	1.0
OCHGMDOC_36	0.0	1.0	0.0
OCHGMDOC_37	0.0	1.0	0.0
OCHGMDOC_38	0.0	1.0	0.0
OCHGMDOC_39	0.0	1.0	0.0
OCHGMDOC_40	1.0	0.0	1.0
OCHGMDOC_41	1.0	0.0	1.0
OCHGMDOC_42	0.0	1.0	0.0
OCHGMDOC_44	0.0	1.0	0.0
OCHGMDOC_45	0.0	1.0	0.0
OCHGMDOC_46	1.0	0.0	1.0
OCHGMDOC_47	0.0	1.0	0.0
OCHGMDOC_48	0.0	1.0	0.0
OCHGMDOC_50	1.0	0.0	1.0
OCHGMDOC_51	0.0	1.0	0.0
OCHGMDOC_52	0.0	1.0	0.0
OCHGMDOC_53	0.0	1.0	0.0
OCHGMDOC_54	0.0	1.0	0.0
OCHGMDOC_58	1.0	0.0	1.0
OCHGMDOC_59	1.0	0.0	1.0
OCHGMDOC_60	0.0	1.0	0.0
OCHGMDOC_62	1.0	0.0	1.0
OCHGMDOC_63	0.0	1.0	0.0
OCHGMDOC_64	0.0	1.0	0.0
OCHGMDOC_66	0.0	1.0	0.0
OCHGMDOC_67	1.0	0.0	1.0
OCHGMDOC_68	0.0	1.0	0.0
OCHGMDOC_70	1.0	0.0	1.0
OCHGMDOC_71	0.0	1.0	0.0
OCHGMDOC_72	1.0	0.0	1.0
OCHGMDOC_73	0.0	1.0	0.0
OCHGMDOC_74	1.0	0.0	1.0
OCHGMDOC_75	0.0	1.0	0.0
OCHGMDOC_76	0.0	1.0	0.0
OCHGMDOC_77	1.0	0.0	1.0
OCHGMDOC_78	1.0	0.0	1.0
OCHGMDOC_79	0.0	1.0	0.0
OCHGMDOC_80	0.0	1.0	0.0
OCHGMDOC_81	1.0	0.0	1.0
OCHGMDOC_82	0.0	1.0	0.0
OCHGMDOC_84	1.0	0.0	1.0
OCHGMDOC_85	0.0	1.0	0.0
OCHGMDOC_86	0.0	1.0	0.0
OCHGMDOC_88	0.0	1.0	0.0
OCHGMDOC_89	0.0	1.0	0.0
OCHGMDOC_90	1.0	0.0	1.0
OCHGMDOC_91	0.0	1.0	0.0
OCHGMDOC_92	1.0	0.0	1.0
OCHGMDOC_93	0.0	1.0	0.0
OCHGMDOC_94	0.0	1.0	0.0
OCHGMDOC_95	0.0	1.0	0.0
OCHGMDOC_97	0.0	1.0	0.0
OCHGMDOC_98	1.0	0.0	1.0
OCHGMDOC_100	0.0	1.0	0.0
OCHGMDOC_101	0.0	1.0	0.0
OCHGMDOC_102	1.0	0.0	1.0
OCHGMDOC_104	1.0	0.0	1.0
OCHGMDOC_105	0.0	1.0	0.0
OCHGMDOC_107	1.0	0.0	1.0
OCHGMDOC_108	0.0	1.0	0.0
OCHGMDOC_109	0.0	1.0	0.0
OCHGMDOC_111	0.0	1.0	0.0
OCHGMDOC_112	0.0	1.0	0.0
OCHGMDOC_113	0.0	1.0	0.0
OCHGMDOC_114	1.0	0.0	1.0
OCHGMDOC_115	1.0	0.0	1.0
OCHGMDOC_116	0.0	1.0	0.0
OCHGMDOC_117	1.0	0.0	1.0
OCHGMDOC_118	1.0	0.0	1.0
OCHGMDOC_119	1.0	0.0	1.0
OCHGMDOC_121	0.0	1.0	0.0
OCHGMDOC_122	0.0	1.0	0.0
OCHGMDOC_123	0.0	1.0	0.0
OCHGMDOC_124	0.0	1.0	0.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage

Phigaro

Query ID	Begin	End	Transposable	Taxonomy	pVOGs
OCHGMDOC_36	61432	87838	False	Siphoviridae	VOG8294, VOG9998, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4573, VOG4556, VOG0202, VOG7454, VOG1886, VOG4581, VOG4841, VOG0198, VOG3643, VOG0044, VOG0044
OCHGMDOC_124	36963	47858	False	Siphoviridae	VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198
OCHGMDOC_124	56418	86982	False	Siphoviridae	VOG0535, VOG0322, VOG6545, VOG5046, VOG0189, VOG4693, VOG0044, VOG0198, VOG0638, VOG0796, VOG4544, VOG5821, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG4910, VOG0801, VOG4619, VOG9531