Potential risk score of uploaded strain

ARGs VFs PGs PRS
0022.00

PRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
OPOLCLKM_3359435360139WalR3.29e-114transcriptional regulatory protein84.25100.00EPH95667
OPOLCLKM_22250106250300CspR2.37e-29cold shock protein84.6198.48AAO82613
OPOLCLKM_22250106250303CspA3.64e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
OPOLCLKM_253166132562rep38903 / 90398.89CP005943

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
OPOLCLKM_11.00.01.0
OPOLCLKM_20.01.00.0
OPOLCLKM_30.01.00.0
OPOLCLKM_40.01.00.0
OPOLCLKM_51.00.01.0
OPOLCLKM_60.01.00.0
OPOLCLKM_80.01.00.0
OPOLCLKM_90.01.00.0
OPOLCLKM_100.01.00.0
OPOLCLKM_111.00.01.0
OPOLCLKM_121.00.01.0
OPOLCLKM_131.00.01.0
OPOLCLKM_161.00.01.0
OPOLCLKM_181.00.01.0
OPOLCLKM_191.00.01.0
OPOLCLKM_200.01.00.0
OPOLCLKM_220.01.00.0
OPOLCLKM_241.00.01.0
OPOLCLKM_251.00.01.0
OPOLCLKM_261.00.01.0
OPOLCLKM_270.01.00.0
OPOLCLKM_280.01.00.0
OPOLCLKM_301.00.01.0
OPOLCLKM_311.00.01.0
OPOLCLKM_330.01.00.0
OPOLCLKM_350.01.00.0
OPOLCLKM_360.01.00.0
OPOLCLKM_370.01.00.0
OPOLCLKM_380.01.00.0
OPOLCLKM_391.00.01.0
OPOLCLKM_401.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
OPOLCLKM_22405471431016FalseSiphoviridaeVOG0198, VOG4841, VOG4581, VOG1886, VOG6939, VOG4556, VOG4568, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870
OPOLCLKM_272305750003FalseSiphoviridaeVOG9998, VOG10251, VOG1467, VOG4868, VOG9529, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0638, VOG1183, VOG3443, VOG3558, VOG0198, VOG11003, VOG5039, VOG4693
OPOLCLKM_275719672810FalseSiphoviridaeVOG1012, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632, VOG5532, VOG0944
OPOLCLKM_363039462300FalseSiphoviridaeVOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG1298, VOG0044, VOG3643, VOG4673, VOG8478, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888

Phigaro v2.4.0 (Database: Jan. 2024 release)

Insertion sequence (IS) elements