| ARGs | VFs | PGs | PRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CFPELGCE_16 | 109318 | 110022 | WalR | 2.42e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CFPELGCE_4 | 143312 | 143118 | CspR | 2.42e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CFPELGCE_4 | 143312 | 143115 | CspA | 3.70e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFPELGCE_1 | 1.0 | 0.0 | 1.0 |
| CFPELGCE_2 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_3 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_4 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_5 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_6 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_7 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_8 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_9 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_10 | 1.0 | 0.0 | 1.0 |
| CFPELGCE_11 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_12 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_14 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_15 | 1.0 | 0.0 | 1.0 |
| CFPELGCE_16 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_17 | 1.0 | 0.0 | 1.0 |
| CFPELGCE_18 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_19 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_20 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_21 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_22 | 1.0 | 0.0 | 1.0 |
| CFPELGCE_23 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_24 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_26 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_28 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_29 | 1.0 | 0.0 | 1.0 |
| CFPELGCE_30 | 0.0 | 1.0 | 0.0 |
| CFPELGCE_31 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CFPELGCE_4 | 441841 | 473072 | False | Siphoviridae | VOG0713, VOG0054, VOG1637, VOG8294, VOG9998, VOG7896, VOG4879, VOG4856, VOG3463, VOG3462, VOG0801, VOG6163, VOG1323, VOG0725, VOG0799, VOG0724, VOG9583, VOG0723, VOG4713, VOG1887, VOG3434, VOG4564, VOG0720, VOG4544, VOG0796, VOG5616, VOG1183, VOG0418, VOG0198, VOG1049, VOG3643 |
| CFPELGCE_6 | 11077 | 37799 | False | Siphoviridae | VOG0044, VOG3643, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
Phigaro v2.4.0 (Database: Jan. 2024 release)