Potential risk score of uploaded strain

ARGs VFs PGs PRS
0022.00

PRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
JCJINCFK_197315873862WalR8.13e-115transcriptional regulatory protein84.25100.00EPH95667
JCJINCFK_27154609154415CspR1.70e-29cold shock protein84.6198.48AAO82613
JCJINCFK_27154609154412CspA2.61e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
JCJINCFK_11.00.01.0
JCJINCFK_21.00.01.0
JCJINCFK_31.00.01.0
JCJINCFK_41.00.01.0
JCJINCFK_51.00.01.0
JCJINCFK_60.01.00.0
JCJINCFK_70.01.00.0
JCJINCFK_81.00.01.0
JCJINCFK_91.00.01.0
JCJINCFK_101.00.01.0
JCJINCFK_110.01.00.0
JCJINCFK_120.01.00.0
JCJINCFK_130.01.00.0
JCJINCFK_140.01.00.0
JCJINCFK_150.01.00.0
JCJINCFK_160.01.00.0
JCJINCFK_181.00.01.0
JCJINCFK_190.01.00.0
JCJINCFK_211.00.01.0
JCJINCFK_220.01.00.0
JCJINCFK_240.01.00.0
JCJINCFK_251.00.01.0
JCJINCFK_260.01.00.0
JCJINCFK_270.01.00.0
JCJINCFK_280.01.00.0
JCJINCFK_290.01.00.0
JCJINCFK_311.00.01.0
JCJINCFK_321.00.01.0
JCJINCFK_330.01.00.0
JCJINCFK_341.00.01.0
JCJINCFK_361.00.01.0
JCJINCFK_370.01.00.0
JCJINCFK_380.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
JCJINCFK_5763429084FalseSiphoviridaeVOG3498, VOG10957, VOG4599, VOG4605, VOG4545, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886
JCJINCFK_1480832114036FalseSiphoviridaeVOG4566, VOG0189, VOG4693, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG4783, VOG4918, VOG0753, VOG0054, VOG1521
JCJINCFK_2990292103988FalseSiphoviridaeVOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198
JCJINCFK_29112528145935FalseSiphoviridaeVOG0181, VOG7298, VOG1309, VOG0186, VOG4566, VOG4693, VOG0198, VOG0045, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637

Phigaro v2.4.0 (Database: Jan. 2024 release)

Insertion sequence (IS) elements