Potential risk score of uploaded strain

ARGs VFs PGs PRS
0022.00

PRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
CFGDLDNA_11248409249113WalR3.83e-114transcriptional regulatory protein84.25100.00EPH95667
CFGDLDNA_18156855156661CspR2.27e-29cold shock protein84.6198.48AAO82613
CFGDLDNA_18156855156658CspA3.48e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
CFGDLDNA_211343814046rep38610 / 90390.00CP005943
CFGDLDNA_970838015repUS73949 / 110183.46CP002654
CFGDLDNA_623123247rep28937 / 93681.54CP005948

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
CFGDLDNA_11.00.01.0
CFGDLDNA_20.01.00.0
CFGDLDNA_40.01.00.0
CFGDLDNA_50.01.00.0
CFGDLDNA_61.00.01.0
CFGDLDNA_70.01.00.0
CFGDLDNA_80.01.00.0
CFGDLDNA_91.00.01.0
CFGDLDNA_110.01.00.0
CFGDLDNA_121.00.01.0
CFGDLDNA_130.01.00.0
CFGDLDNA_140.01.00.0
CFGDLDNA_150.01.00.0
CFGDLDNA_160.01.00.0
CFGDLDNA_171.00.01.0
CFGDLDNA_180.01.00.0
CFGDLDNA_211.00.01.0
CFGDLDNA_230.01.00.0
CFGDLDNA_240.01.00.0
CFGDLDNA_250.01.00.0
CFGDLDNA_261.00.01.0
CFGDLDNA_270.01.00.0
CFGDLDNA_311.00.01.0
CFGDLDNA_320.01.00.0
CFGDLDNA_330.01.00.0
CFGDLDNA_340.01.00.0
CFGDLDNA_350.01.00.0
CFGDLDNA_360.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
CFGDLDNA_2590535102622FalseSiphoviridaeVOG2687, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198
CFGDLDNA_25113277147759FalseSiphoviridaeVOG11003, VOG6495, VOG0181, VOG7298, VOG1309, VOG0186, VOG4566, VOG4693, VOG0198, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637
CFGDLDNA_345411786321FalseSiphoviridaeVOG3443, VOG1191, VOG1521, VOG0054, VOG0753, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904, VOG4841, VOG0198, VOG9671, VOG0044, VOG6005
CFGDLDNA_353103434723FalseSiphoviridaeVOG4632, VOG7169, VOG4565, VOG4552, VOG3699

Phigaro v2.4.0 (Database: Jan. 2024 release)

Insertion sequence (IS) elements