Potential risk score of uploaded strain

ARGs VFs PGs PRS
0022.00

PRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
PLDOCLOB_795341952715WalR6.00e-115transcriptional regulatory protein84.25100.00EPH95667
PLDOCLOB_888847088276CspR8.43e-30cold shock protein84.6198.48AAO82613
PLDOCLOB_888847088273CspA1.29e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
PLDOCLOB_52934510445repUS731101 / 110194.46CP002654
PLDOCLOB_2911015repUS64930 / 95485.48JN601038
PLDOCLOB_1923083337rep381040 / 110481.92CP002655

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
PLDOCLOB_11.00.01.0
PLDOCLOB_21.00.01.0
PLDOCLOB_31.00.01.0
PLDOCLOB_40.01.00.0
PLDOCLOB_50.01.00.0
PLDOCLOB_61.00.01.0
PLDOCLOB_71.00.01.0
PLDOCLOB_80.01.00.0
PLDOCLOB_120.01.00.0
PLDOCLOB_130.01.00.0
PLDOCLOB_140.01.00.0
PLDOCLOB_150.01.00.0
PLDOCLOB_161.00.01.0
PLDOCLOB_181.00.01.0
PLDOCLOB_191.00.01.0
PLDOCLOB_200.01.00.0
PLDOCLOB_220.01.00.0
PLDOCLOB_230.01.00.0
PLDOCLOB_250.01.00.0
PLDOCLOB_280.01.00.0
PLDOCLOB_291.00.01.0
PLDOCLOB_311.00.01.0
PLDOCLOB_331.00.01.0
PLDOCLOB_351.00.01.0
PLDOCLOB_361.00.01.0
PLDOCLOB_370.01.00.0
PLDOCLOB_380.01.00.0
PLDOCLOB_390.01.00.0
PLDOCLOB_411.00.01.0
PLDOCLOB_430.01.00.0
PLDOCLOB_450.01.00.0
PLDOCLOB_460.01.00.0
PLDOCLOB_471.00.01.0
PLDOCLOB_481.00.01.0
PLDOCLOB_491.00.01.0
PLDOCLOB_500.01.00.0
PLDOCLOB_511.00.01.0
PLDOCLOB_521.00.01.0
PLDOCLOB_530.01.00.0
PLDOCLOB_541.00.01.0
PLDOCLOB_551.00.01.0
PLDOCLOB_561.00.01.0
PLDOCLOB_570.01.00.0
PLDOCLOB_580.01.00.0
PLDOCLOB_591.00.01.0
PLDOCLOB_600.01.00.0
PLDOCLOB_610.01.00.0
PLDOCLOB_621.00.01.0
PLDOCLOB_630.01.00.0
PLDOCLOB_641.00.01.0
PLDOCLOB_671.00.01.0
PLDOCLOB_681.00.01.0
PLDOCLOB_690.01.00.0
PLDOCLOB_700.01.00.0
PLDOCLOB_731.00.01.0
PLDOCLOB_741.00.01.0
PLDOCLOB_750.01.00.0
PLDOCLOB_760.01.00.0
PLDOCLOB_771.00.01.0
PLDOCLOB_781.00.01.0
PLDOCLOB_790.01.00.0
PLDOCLOB_810.01.00.0
PLDOCLOB_830.01.00.0
PLDOCLOB_841.00.01.0
PLDOCLOB_850.01.00.0
PLDOCLOB_860.01.00.0
PLDOCLOB_880.01.00.0
PLDOCLOB_891.00.01.0
PLDOCLOB_901.00.01.0
PLDOCLOB_910.01.00.0
PLDOCLOB_941.00.01.0
PLDOCLOB_950.01.00.0
PLDOCLOB_971.00.01.0
PLDOCLOB_991.00.01.0
PLDOCLOB_1000.01.00.0
PLDOCLOB_1011.00.01.0
PLDOCLOB_1030.01.00.0
PLDOCLOB_1040.01.00.0
PLDOCLOB_1060.01.00.0
PLDOCLOB_1070.01.00.0
PLDOCLOB_1081.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
PLDOCLOB_29866938461FalseSiphoviridaeVOG0514, VOG4799, VOG0189, VOG6005, VOG3480, VOG0044, VOG4010, VOG0198, VOG4841, VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG9998
PLDOCLOB_104155935384FalseSiphoviridaeVOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0198, VOG4693, VOG4566, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495
PLDOCLOB_1044666554451FalseSiphoviridaeVOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205

Phigaro v2.4.0 (Database: Jan. 2024 release)

Insertion sequence (IS) elements